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SolexaQA calculates sequence top quality statistics and makes visual representations of data quality for next-era sequencing info. Originally designed for your Illumina method (Traditionally known as “Solexaâ€), SolexaQA now also supports Ion Torrent and 454 data.
Style and utilize bioinformatics algorithms including unsupervised and supervised device Studying, dynamic programming, or graphic algorithms.
FusionMap FusionMap is actually a fusion aligner which aligns reads spanning fusion junctions directly to the genome without prior expertise in potential fusion locations.
De novo Splice aligners enable the detection of new Splice junctions with out should earlier annotated information (Many of these tools current annotation as being a suplementar possibility).
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GIIRA GIIRA is a gene prediction system that identifies possible coding areas exclusively based upon the mapping of reads from an RNA-Seq experiment.
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There are 2 kinds of approaches to assemble transcriptomes. Genome-guided strategies make use of a reference genome (if at all possible a finished and top quality genome) to be a template to align and assembling reads into transcripts.